Click here to see the data for all of the Lehigh phages
GenBank Submissions and Publications
from LEHIGH SEA-PHAGES Program
Conributors/phage are shown in BOLD
Welkin H. Pope, Charles A. Bowman, Daniel A. Russell, Deborah Jacobs-Sera, David J. Asai, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA- PHAGES), Phage Hunters Integrating Research and Education (PHIRE) PHIRE, Mycobacterial Genetics Course (MGC), Steven G. Cresawn, William R. Jacobs Jr., Roger W. Hendrix, Jeffrey G. Lawrence, and Graham F. Hatfull. 2015. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of bacteriophage genetic diversity. eLIFE, in press.
Lehigh co-authors from the SEA-PHAGES program include:
Vassie C. Ware, Margaret A. Kenna, Jutta Y. Marzillier, Michael G. Kearse, Christina Godfried Sie, Jayalakshmi A. Govindan, Catherine M. Mageeney, Ainsley Timmel, Stephanie Mack, Lauren Kraft, Michelle Juarez, Abbey Perl, Aislinn Rowan, James Bowen, Lena Ma, Lindsay Miller, Jennifer Lewis, Barrett Miller, Brandon Bensel, Rachel Fieman, Jon Harrison, Bryan Kim, Trevene Bell, Theresa Collins, Jennifer Colquhoun, Evan Lambert, Gina Notaro, Smrithi Prem, Amanda Reicherter, Jacqueline Synder, Elliot Swartz, Alyssa Vecchio, Kristen Wymore, Lynda Asadourian, Samantha Frangos, Dana DeSantis, Erin Kennedy, Megan Robertson, Devon Taylor, Cassandra Tuttman, Peggy Lai, Samantha Magier, Caroline Petersen, Michael Santana, Danielle Sin, Cameron Feathers, Melissa, Feeney, Kyra Feuer, Sonja Gorman, Melanie Grajales, Emily Heckman, Jennifer Schlegel, Lisa Lark, Rachel Sternberg
Cresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, Russell DA, Dedrick RM, Adair T, Anders KR, Ball S, Bollivar D, Breitenberger C, Burnett SH, Butela K, Byrnes D, Carzo S, Cornely KA, Cross T, Daniels RL, Dunbar D, Findley AM, Gissendanner CR, Golebiewska UP, Hartzog GA, Hatherill JR, Hughes LE, Jalloh CS, De Los Santos C, Ekanem K, Khambule SL, King RA, King-Smith C, Klyczek K, Krukonis GP, Laing C, Lapin JS, Lopez AJ, Mkhwanazi SM, Molloy SD, Moran D, Munsamy V, Pacey E, Plymale R, Poxleitner M, Reyna N, Schildbach JF, Stukey J30, Taylor SE, Ware VC, Wellmann AL, Westholm D, Wodarski D, Zajko M, Zikalala TS, Hendrix RW, Hatfull GF. 2015. Comparative genomics of cluster o mycobacteriophages. PLoS One. Mar 5;10(3):e0118725. doi: 10.1371/journal.pone.0118725. eCollection 2015.
Delgado,B.M., Feathers,C.T., Feeney,M.S., Feuer,K.L., Florin,D.T., Gordon,M.B., Gorman,S.E., Grajales,M., Heckman,E.L., Juarez,M.C., Kenna,M.A., Mageeney,C.M., Marzillier,J.Y., Miller,B.D., Schlegel,J.L., So,C.Y., Sternberg,R.A., Ware,V.C., Anders,K.R., Braun,M.A., Delesalle,V.A., Hughes,L.E., Bradley,K.W., Barker,L.P., Asai,D.J., Bowman,C.A., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2014. Mycobacterium phage Lasso, complete genome. ACCESSION KM408320. VERSION KM408320.1 GI: 678222590.
Delgado,B.M., Feathers,C.T., Feeney,M.S., Feuer,K.L., Florin,D.T., Gordon,M.B., Gorman,S.E., Grajales,M., Heckman,E.L., Juarez,M.C., Kenna,M.A., Mageeney,C.M., Marzillier,J.Y., Miller,B.D., Schlegel,J.L., So,C.Y., Sternberg,R.A., Ware,V.C., Anders,K.R., Braun,M.A., Delesalle,V.A., Hughes,L.E., Bradley,K.W., Barker,L.P., Asai,D.J., Bowman,C.A., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2014. Mycobacterium phage Swirley, complete genome. ACCESSION KM101118. VERSION KM101118.1 GI: 673940148.
Sin,D.N., Magier,S.J., Frangos,S., Stomel,J.S., Petersen,C.L., Ma,L., Godfried Sie, C., Govindan,J., Kenna,M.A., Marzillier,J.Y., Ware,V.C., Buck,G.A., Campbell,R., Carvalho,M.R., Johnson,A., Kettlewell,J.M., Lee,V., Loviza,R., Renner,D., Serrano,M.G., Voegtly,L.J., Walstead,R., Wang,Y.P., Bradley,K.W., Khaja,R., Lewis,M.F., Barker,L.P., Asai,D.J., Bowman,C.A., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2013. Mycobacterium phage Butters, complete genome, ACCESSION NC_021061.
Bowen,J.P., Carson,A.B., Deyang,T., Frangos,S., Godfried-Sie,C.P., Govindan,J., Hanna,S., Kenna,M.A., Lai,P.A., Lewis,J.K., Magier,S.J., Marzillier,J.Y., Petersen,C.L., Robertson,M.E., Rowan,A.D., Santana,M.A., Sin,D.N., Stomel,J.S., Sullivan, B.J.,Ware,V.C., Wang,X., Crowell,R., Bostrom,M.A., Burke,M.,Wright,G.M., Gregory,S.G., Colman,S.D., Bradley,K.W., Khaja,R., Lewis,M.F., Barker,L.P., Asai,D.J., Bowman,C.A., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2013. Mycobacterium phage Wanda, complete genome, ACCESSION NC_022067,VERSION NC_022067.1 GI:530546800.
Graham F. Hatfull1, Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science
(SEA-PHAGES) program, KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course, University of California Los Angeles Research Immersion Laboratory in Virology, Phage Hunters Integrating Research and Education (PHIRE) program. 2013. The complete genome sequences of 63 mycobacteriophages. genomeA, in press.
(Note that VCW and Lehigh students are a part of the SEA-PHAGES program and contributed 2 phage genomes [Butters, Wanda] to this genome announcement).
Tuajuanda Jordan, Sandra Burnett, Susan Carson, Steve Caruso, Kari Clase, Randall DeJong, John Dennehy, Dee Denver, David Dunbar, Sarah Elgin, Ann Findley, Chris
Gissendanner, Urszula Golebiewska, Nancy Guild, Grant Hartzog, Wendy Grillo, Gail Hollowell, Lee Hughes, Allison Johnson, Rodney King, Lynn Lewis, Wei Li, Raphael , Michael Rubin, Margaret Saha, James Sandoz, Christopher Shaffer, Barbara Taylor, Louise Temple, Edwin Vazquez, Vassie Ware, Lucia Barker, Kevin Bradley, Deborah Jacobs-Sera, Welkin Pope, Dan Russell, Steven Cresawn, David Lopatto, Cheryl Bailey, and Graham Hatfull. 2013. A broadly implementable research course in phage discovery and genomics for first-year undergraduate students. mBio 5(1):e01051-13. doi:10.1128/mBio.01051-13.
Miller,SY, Colquhoun,JM, Perl,AL, Chamakura,KR, Kuty Everett,GF. Complete Genome of Bacillus subtilis Myophage Grass. 2013 Dec 5;1(6). pii: e00857-13. doi: 10.1128/genomeA.00857-13.
Hatfull, G.F., Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science
(SEA-PHAGES) program, KwaZulu-Natal Research Institute for Tuberculosis and HIV (K-RITH) Mycobacterial Genetics Course, Phage Hunters Integratin Research and Education (PHIRE) program. The complete genome sequences of 138 mycobacteriophages. J Virol. 2012 Feb;86(4):2382-4. doi: 10.1128/JVI.06870-11.
(Note that VCW and Lehigh students are a part of the SEA-PHAGES program and contributed 3 phage genomes [ABU, Dreamboat, Euphoria] to this genome announcement).
Bell,T., Collins,T.A., Colquhoun,J.M., Fieman,R.E., Fisher,J.M., Harrison,J.M., Kim,B.S., Lai,Y.C., Lambert,E.C., Maloney,S.R., Miller,L.M., Nordberg,R.C., Notaro,G.M., Prem,S., Reicherter,A.L., Snyder,J.M., Swartz,E.W., Timmel,A.E., Vecchio,A.C., Wymore,K.M., Kearse,M.G., Kenna,M.A., Marzillier,J.Y., Ware,V.C., Zhang,X., Meincke,L.J., Goodwin,L.A., Detter,J.C., Han,S., Green,L.D., Bradley,K.W., Khaja,R., Lewis,M.F., Barker,L.P., Jordan,T.C., Russell,D.A., Leuba,K.D., Fritz,M.J., Bowman,C.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2011. Mycobacterium phage ABU, complete genome. Accession JF70409, VERSION: JF704091.1 GI:339754149.
Mack,S.N., Kraft,L.M., DeSantis,D.F., Cruz,Y., Asadourian,L.S., Godfried Sie,C.P., Kearse, M.G., Kenna,M.A., Marzilla,J.Y., Ware,V.C., Serrano,M.G., Lee,V., Hendricks,S.L., Voegtly,L.J.,Glascock,A.L., Carvalho,M.Ruth., Buck,G.A., Bradley,K.W., Khaja,R., Lewis,M.F., Barker,L.P., Jordan,T.C., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2011. Mycobacterium phage Dreamboat, complete genome. Accession JN660814, VERSION JN660814.1
GI:347450202.
Asadourian,L.S., Bensel,B.M., Chen,J., Colandrea,L.A., Cruz,Y., DeSantis, D.F., Kelley,R.A., Kennedy,E., Kraft,L.M., Lark,L.A., Mack,S.N., Perl,A.L., Taylor,D.H., Tuttman,C.B., Godfried,S.C., Kearse,M.G., Kenna,M.A., Marzillier,J., Ware,V.C., Wang,X., Crowell,R., Burke,M., Wright,G.M., Gregory,S.G., Colman,S.D., Bradley,K.W., Khaja,R., Lewis,M.F., Barker,L.P., Jordan,T.C., Russell,D.A., Pope,W.H., Jacobs-Sera,D., Hendrix,R.W. and Hatfull,G.F. 2011. Mycobacterium phage Euphoria, complete genome, ACCESSION JN153086; VERSION: JN153086.1 GI:339753640.
Jacobs-Sera,D., Zellars,M., Wells,M.E., Webb,J.L., Ware,V.C., Vazquez,E., TamarapuParthasarathy,P., Smith,I.A., Simon,S.E., Shaffer,C.D., Rubin,M.R., Rosenzweig,R.F., Rinehart,C.A., Qin,H., Pillay,I., Payne,D.E. II, Padolina,J.M.,
Novick,P.A., Miller,E.S., Mayer,E.S., Marzillier,J.Y., Mageeney,C.M., MacGibeny,M.A., Li,W., Lee,J.Y., Kinnersley,M.A., King-Smith,C., King,R.A., Kenna,M.A., Kearse,M.G., Johnson,B.K., Johnson,A.A., Johnson,C.M., Hughes,L.E., Harrison,M., Guild,N.A., Gilbert,J.L., Fillman,C.L., Felton,C.M., Dunbar,D.A., Dennehy,J.J., DeJong,R.J., Carson,S., Burnett,S.H., Breakwell,D.P., Berrios,J.E., Benjamin,R.C., Anderson,J.J., Bradley,K.W., Khaja,R., Lee,E., Barker,L.P., Lewis,M.F., Jordan,T.C., Cresawn,S.G., Grace,M.A., Pope,W.H., Ko,C., Russell,D.A., Peebles,C.L., Lawrence,J.L., Hendrix,R.W. and Hatfull,G.F. 2010. Mycobacterium sp. phage RedRock, complete genome. ACCESSION GU339467. VERSION GU339467.1 GI:284794768.